PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G214000.1
Common NameB456_008G214000, LOC105764872
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 237aa    MW: 26288.4 Da    PI: 7.5721
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G214000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.13.4e-2190141155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GVr+++ +g+++AeIrdp   + k +r++lg+f+ta eAaka+++a+ kl+g
  Gorai.008G214000.1  90 SHYRGVRRRP-WGKFAAEIRDP---NkKGARVWLGTFDTAIEAAKAYDRAAFKLRG 141
                         79********.**********9...4345*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.37E-3390150No hitNo description
SuperFamilySSF541711.5E-2390151IPR016177DNA-binding domain
PfamPF008472.5E-1590141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-3291151IPR001471AP2/ERF domain
SMARTSM003804.0E-3891155IPR001471AP2/ERF domain
PROSITE profilePS5103224.64591149IPR001471AP2/ERF domain
PRINTSPR003678.7E-1492103IPR001471AP2/ERF domain
PRINTSPR003678.7E-14131151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MACSEETSAQ LELIRQHLFT DFASMETPPP FYQLSNSESS HVYSPTRLKQ SSLSQRRPSI  60
NVMIPPTSFN IGPNPVPDSA AVAVESYEKS HYRGVRRRPW GKFAAEIRDP NKKGARVWLG  120
TFDTAIEAAK AYDRAAFKLR GSKAILNFPH EAGKSNFSES GKRRRNEEEG EGEKRVSLLE  180
SKAGRREEEV TVAECGTPSN QTGIGDNEDI NEIFGGPLLS PLSSFPWFGY SRLEVM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2991149563ATERF1
3gcc_A3e-2991149563ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.1260.0seedling
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487793290.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439108.11e-175PREDICTED: ethylene-responsive transcription factor ERF105-like
SwissprotQ8VY903e-56EF105_ARATH; Ethylene-responsive transcription factor ERF105
TrEMBLA0A0D2U7561e-175A0A0D2U756_G
STRINGPOPTR_0003s15040.12e-56(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2455234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.14e-53ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]